N.Y. Comp. Codes R. & Regs. tit. 6, § 505.14
(b) If an application is withdrawn before it is determined complete, the fee will be returned to the applicant upon request.
(3) Excavation, grading, mining or filling:
(4) Dredging:
(5) Construction or modification of docks, piers or wharves:
(6) Construction or modification of erosion protection structures:
(c) Fees for review of applications.