N.Y. Comp. Codes R. & Regs. tit. 16, § 1000.8
(a) In accordance with section 401 of the Clean Water Act, if construction or operation of a proposed major electric generating facility, its interconnections, or related facilities would result in any discharge into the navigable water of the United States and require a Federal license or permit, the applicant is required to request and obtain a water quality certification indicating that the proposed activity will be in compliance with water quality standards.
(5) When an applicant or certificate holder has requested both a water quality certification from the board and permits from the U.S. Army Corps of Engineers or other Federal lead agency, the board or a designee will provide information to the district engineer or other Federal lead agency as to whether circumstances require a period of time longer than the period specified in applicable Federal regulations for the certifying agency to act on the request for certification in order to avoid a waiver. The board shall issue, waive or deny such certification within such applicable period after the filing of the application or other document in which the request is made, taking into account whether any Federal agency from which the applicant or certificate holder has sought a license or permit to conduct any activity that may result in any discharge into the navigable waters has:
(b) If the proposed facility affects any land or water use or natural resource of the coastal area and Federal authorization or funding is necessary, the applicant shall, contemporaneously with submitting the application, submit to DOS copies of the application, the applicant's coastal consistency certification and necessary data and information sufficient to initiate a review by DOS pursuant to the Federal Coastal Zone Management Act and its regulations.