N.Y. Comp. Codes R. & Regs. tit. 14, § 841.13
(a) Except where specifically stated otherwise, the requirements of this section shall apply to both eligible inpatient providers under section 841.10 of this Part and eligible residential rehabilitation services for youth providers under section 841.12 of this Part, hereafter collectively referred to as the provider for purposes of this section.
(1) Each provider shall keep and maintain the statistical and financial records which formed the basis of the reports submitted to the commissioner, as required in section 841.5 of this Part, for the later of:
(2) All such records shall be subject to audit during the time period of their keeping and maintenance, as described in paragraph (1) of this subdivision.
(3) All administrative review of audits conducted to determine allowable Medicaid expenses and offsetting revenues shall be in accordance with this subdivision as follows:
(i) At the conclusion of the audit, a proposed audit report may be issued identifying the items which are being disallowed and advising the provider of the basis for the proposed action and the legal authority therefore. When feasible, the proposed report will also specify the amount of the overpayment or underpayment.
(ii) After the office's receipt and review of the provider's objections and additional documentation, or at any time after the expiration of 40 days after mailing of the proposed audit report without objections having been received, a final audit report may be issued by the commissioner regarding those items in the proposed audit report to which the provider objected and a statement of the reasons therefor.
(b) Audits.
(c) Revisions to rates for inpatient rehabilitation programs, revisions to capital and admission review team add-ons for residential rehabilitation services for youth programs, revisions to service operating fees for residential rehabilitation services for youth programs based on changes in certified capacity.
(1) The commissioner may revise or update rates, fees (based on changes in certified capacity), or fee add-ons at his or her own discretion or in response to requests from providers. Such revisions or updates shall be based on:
(2) Rate revision applications shall be made in writing to the commissioner and shall be sent by registered or certified mail.
(i) The applications shall set forth the basis for the revision and the issues of fact, and must comply with the following requirements: